Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12187921 chr5:154209800 A/G 9.12E-9 491 30.23 33.27 20.47 KM Plot
PRAD rs12187934 chr5:154362676 G/A 0 490 30.2 34.52 4.87 KM Plot
PRAD rs12187974 chr5:154283395 T/A 0 494 30.23 33.47 4.87 KM Plot
PRAD rs12188149 chr5:154289753 T/G 0 493 30.33 32.4 4.87 KM Plot
PRAD rs12188498 chr5:154164704 C/A 0 491 29.97 35.57 4.87 KM Plot
PRAD rs12188906 chr5:154171530 G/C 0 490 30.27 33.27 4.87 KM Plot
PRAD rs12189478 chr5:138026078 G/T 8.14E-6 494 30.8 31.27 25.2 KM Plot
PRAD rs12189508 chr5:154209494 C/T 9.5E-9 490 30.27 33.27 20.47 KM Plot
PRAD rs12198319 chr6:3863419 T/A 5.1E-8 470 32.08 29.4 24.27 KM Plot
PRAD rs12272006 chr11:24214991 C/T 5.66E-9 493 30.8 37.47 22.92 KM Plot
PRAD rs12275366 chr11:24209184 C/T 2.76E-8 494 20.93 31.4 30.93 KM Plot
PRAD rs12276290 chr11:24227548 C/T 5.74E-9 493 30.8 38.65 22.92 KM Plot
PRAD rs12276606 chr11:24218930 T/C 2.97E-8 493 30.93 31.43 20.93 KM Plot
PRAD rs12286299 chr11:24220671 A/T 2.97E-8 493 30.93 31.43 20.93 KM Plot
PRAD rs12290931 chr11:71553570 G/C 5.49E-5 491 31.23 26.8 20.93 KM Plot